PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008474-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 126aa    MW: 14572.6 Da    PI: 8.8449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008474-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-172469148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+ +t Edel+++++++lG++ W++Ia +++ gRt++++k++w++yl
  PSME_00008474-RA 24 RGNISTYEDELIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTYL 69
                      7889999***************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-10430IPR009057Homeodomain-like
SuperFamilySSF466891.63E-20477IPR009057Homeodomain-like
PROSITE profilePS5129425.6051973IPR017930Myb domain
SMARTSM007171.3E-142371IPR001005SANT/Myb domain
PfamPF002494.6E-152469IPR001005SANT/Myb domain
CDDcd001672.86E-113169No hitNo description
Gene3DG3DSA:1.10.10.601.0E-213170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGLNRCSKGC RLRWINYLRP DIKRGNISTY EDELIIRLHR LLGNRWSLIA GRLPGRTGNE  60
IKNYWNTYLK KQIGTLNKRD RIEAKVTELE DTDFSISIDP VGANQIAVNI ENNITDEQCP  120
LEDTVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1957540110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304289.18e-39hypothetical protein POPTR_0003s07680g
RefseqXP_007224614.19e-39hypothetical protein PRUPE_ppa026916mg
RefseqXP_008220568.11e-38PREDICTED: transcription factor MYB114-like
SwissprotP813932e-37MYB08_ANTMA; Myb-related protein 308
TrEMBLB9GYD58e-39B9GYD5_POPTR; Uncharacterized protein
TrEMBLM5XVV31e-38M5XVV3_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s07680.12e-38(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-37myb domain protein 7